Restoration of the Accounting System in Estonia

Restoration of the Accounting System in Estonia

Aviso legal: Este contenido tiene carácter meramente informativo y no constituye asesoramiento fiscal ni laboral. Las consecuencias fiscales dependen del tipo de contrato, de la residencia fiscal del trabajador y del lugar donde se realiza el trabajo. Analizamos cada situación de forma individual.

November 6, 2026
Autor:

A late annual report in Estonia is not merely a ‘paperwork’ issue. The Register may fine both the company and each member of the board personally, and after several months of inaction, may begin the process of striking the company off the register. If the TSD and KMD forms were not submitted alongside the reports, this is compounded by claims from the EMTA and tax interest accruing for each day.

The good news is that an overdue report can be submitted at any time, and getting the accounts back on track is a straightforward process. The bad news is that each subsequent year costs more than the last, because documents get lost, business partners disappear, and fines keep piling up.

We restore the accounting records of Estonian companies for one or more years: we check what has and hasn’t been filed, collect documents from banks and payment services, restore registers, submit overdue reports and correct tax returns. We then bring the company up to date with its accounting to ensure the situation does not recur.

Key facts

TopicPractical guidance
Deadline for the annual report6 months after the end of the financial year; for a calendar year – 30 June
Can it be submitted late?Yes, via the e-Business Register at any time; there is no separate form for late submission
Registration fineUp to €3,200 per offence; penalties may be imposed repeatedly
Who is liableThe company and each member of the board personally, including non-residents
Deletion from the registerMay commence approximately 3 months after the reporting deadline has expired
A zero return where transactions have taken placeThis is an incorrect return; the register issues a separate warning
Overdue TSD and KMD returnsThe EMTA charges interest for each day of delay and may assess the tax itself
Purchases of services from abroadAdvertising, web hosting and subscriptions may require VAT registration as a limited liability company — a common finding during audits
Document retention7 years; lost documents can be partially recovered from the bank and service providers
A remote companyIt is more difficult and more expensive to re-register than to submit reports on time

How to recover your account: 4 steps

1
Send us the registration code. We’ll check the company’s details in the register free of charge: which annual returns have been filed, and whether there are any warnings, fines or a record of the start of the winding-up process.
2
Undergo a diagnostic review. Using data from e-MTA and bank statements, we identify which tax periods are still open, which tax returns have not been filed, and whether there are any outstanding tax liabilities. The result is a list of actions to be taken and a fixed-price quote.
3
Pay the invoice and grant access. Access rights to e-MTA, data downloads from banks and payment services, and available documents — all online.
4
Obtain reinstated registration. We submit reports and returns in accordance with the agreed procedure, liaise with the registry and the EMTA, and then transfer the company to standard registration.
How to recover your account: 4 steps

If the registry has already sent a deletion warning, please get in touch straight away — the warning specifies a deadline, and we prioritise dealing with it.

The provider of this service is eBusiness Solutions OÜ

An official and licensed partner providing corporate services in Estonia, and a member of the e-Residency marketplace.

Partner service
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Cost of services

The ‘Diagnostics’ Package
from 150 € 
  • Checking a company in the Commercial Register and e-MTA
  • List of outstanding reports and returns by period
  • Tax risk assessment: TSD, KMD, VAT for limited liability companies
  • Written recovery plan and fixed-price quotation
  • The cost of the diagnostic assessment is included in the recovery package
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The ‘Recovery in a Year’ Package
from 500 € 
  • Everything included in the ‘Diagnostics’ package
  • Collection and reconstruction of source documents from banks and payment services
  • Accounting records and annual report for the period
  • Submission or correction of TSD and KMD returns for the period
  • Responses to the tax office and EMTA for this period
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‘Comprehensive Recovery’ Package
from 1500 € 
  • Reconstructing the periods in the correct order over a period of several years
  • Dealing with deletion warnings and registration fines
  • Correcting previously submitted ‘zero’ or incorrect returns
  • VAT registration where the obligation arose in the past
  • Switching to monthly accounting without interruption
*VAT is added to the prices. The cost depends on the number of periods, the volume of transactions, VAT status and the condition of the documents.
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What happens to a company that fails to submit its reports?

What happens to a company that fails to submit its reports?

The consequences escalate in stages. It is still possible to stop at each stage — but each subsequent one comes at a higher cost.

StageWhenWhat happens
Deadline missedAfter 30 June (for the calendar year)The register shows that the report has not been submitted; this is visible to banks and partners
Warning and fineAt any time after the deadline, sometimes without prior noticeA fine of up to €3,200 per company and per board member; may be repeated
Warning of deregistrationApproximately 3 months after the deadlineThe Register initiates the deregistration procedure and publishes a notice in Ametlikud Teadaanded
Deletion from the registerAfter the deadline specified in the noticeThe company ceases to exist; contracts, accounts and assets are left without a legal entity as their owner

At the same time, tax proceedings are underway. If no TSD or KMD returns have been filed, the EMTA charges interest for each day of delay and may determine the tax itself — based on its own assessments rather than on your documents.

Key insight: the most costly thing is not the fine, but what lies within

Key insight: the most costly thing is not the fine, but what lies within

Business owners usually think of restatement as ‘submitting missed reports’. In practice, when compiling the accounts, one of three issues almost always arises.

  • Zero-balance reports despite actual transactions. The company submitted ‘zero’ annual returns, yet the account showed receipts, subscriptions and transfers to the owner. Such returns will need to be corrected, and payments to the owner without supporting documentation will need to be treated as taxable.
  • Overlooked VAT for limited liability companies. Google Ads, Meta, AWS and SaaS subscriptions from foreign suppliers constitute the purchase of services for which a company without standard VAT registration must self-assess VAT. There is no threshold here, and when back-calculated over several years, the amount can be substantial.
  • Personal expenses charged to the company’s account. This is not merely an accounting error. Without supporting documents, such amounts are treated as non-business-related payments, subject to a 22/78 tax rate.

Practical conclusion: our first step is to carry out a diagnostic review and present the full picture – before you pay for the filing. If the company is no longer needed, it is sometimes more cost-effective to restore the accounts and wind it up straight away than to continue maintaining it. We consider both scenarios.

What else you might need: services as a package

What else you might need: services as a package

Restoring accounting records: how it works in practice

Where the diagnosis begins

We examine three sources. The Commercial Register shows submitted reports, warnings and fines. e-MTA shows submitted returns, the balance of the prepayment account and claims. Bank statements show what actually happened to the money. The discrepancy between these three sets of data represents the scope of the work.

If there are no documents

This is the most common question, and the answer is usually better than the owner expects. Banks, Wise, Revolut, Stripe and PayPal store transaction histories — from these, most of the picture can be pieced together. Supplier invoices can be requested again or downloaded from your personal accounts: hosting, advertising, software. Where there is no document and it cannot be obtained, the transaction is recorded by a board resolution with an explanation — and we assess its tax implications honestly.

The order in which reports are submitted

Periods are reconstructed chronologically: the opening balances for each year are the closing balances of the previous year. However, the order of submission is determined by the risks involved: if the tax authority has already issued a deletion warning, the items specified in the warning are closed first.

Correcting tax returns and tax interest

Incorrect TSD and KMD returns are corrected for the periods to which they relate. The EMTA charges interest on underpaid tax for each day. If the amount is substantial, it is possible to apply for an instalment plan for the tax debt – we prepare such an application.

Factors affecting the cost

FactorHow it affects
Number of periodsEach year constitutes a separate full accounting and reporting cycle
Volume of transactionsHundreds of Stripe transactions a month and five bank transactions a year — a very different workload
VAT statusMonthly KMD and limited liability VAT audits add to the workload
Document retentionThe more documents that need to be recovered, the more expensive it is
Staff and paymentsReconstruction of TSD and payroll calculations
Registration alertsPrioritising work on registration deadlines

The general rule is simple: restoring records for one year costs a fraction of the cost of restoring them for three years.

Frequently Asked Questions

Yes. A late report can be submitted via the e-Business Register at any time; there is no separate procedure for late submissions. The sooner it is submitted, the lower the risk of fines and deregistration.
The Registrar may impose a fine of up to €3,200 for each breach, and such fines may be imposed repeatedly. This applies to the company and to each member of the board of directors personally, including non-residents.
The removal procedure may begin approximately three months after the reporting deadline has passed. The register publishes a notice setting out the timeframe within which the situation can be rectified.
Do not wait. Submit the missing reports by the deadline specified in the warning, and check whether there are any other reasons — for example, the absence of a contact person.
In most cases, yes. The basis is provided by statements from banks and payment service providers, whilst invoices are downloaded again from suppliers’ online accounts. Transactions without supporting documents are formalised by board resolutions, which include an assessment of the tax implications.
Yes: such a report is incorrect, and the register may issue a separate warning for this. The reports must be corrected, and the payments to the owner must be correctly classified.
Yes. The EMTA charges interest on outstanding tax for each day the payment is overdue. If the amount is substantial, you can apply for an instalment plan.
This depends on the number of periods, the volume of transactions, VAT status and the condition of the documents. Following an assessment, we will provide a fixed quote.
Winding up requires the accounts to be brought up to order, so a restoration will be necessary in any case. However, if the company is no longer required, we will organise the restoration and winding-up as a single project.
Verificado por un experto
Jana Kamoza
  • Jana Kamoza
  • Director ejecutivo y asesor legal en eBusiness Solutions OÜ
  • Más de 6 años de experiencia en servicios corporativos, cumplimiento normativo y negocios internacionales
  • Linkedin

Send us your registration code — we’ll check your company for free

Please provide your registration code and, if available, attach your registration letter or EMTA. We will check which reports have not been submitted, whether there are any warnings or deadlines, and get back to you with a plan and a fixed quote within one working day.

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Send us your registration code — we’ll check your company for free
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GATAFIERRAYQUILES PROMOTIONS  profile picture
GATAFIERRAYQUILES PROMOTIONS
2026.11.03.
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Super fast, friendly, and totally professional. Thank you so much! 😊

Owner's reply
Thank you!
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GLEB LUBOVITSKUY  profile picture
GLEB LUBOVITSKUY
2026.10.28.
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Been using them for monthly accounting for a few months now. Everything is submitted on time to the tax office, but communication can be a bit slow at times—had to wait longer than expected for document updates once or twice. solid 4/5 overall.

Owner's reply
Thank you for your feedback! We appreciate your business and are happy to hear that your tax filings are consistently on schedule. We've taken note of your comment about communication—workload spikes can sometimes cause brief delays, but we are working on speeding up our response times. Thank you for your support!
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SERGEY  profile picture
SERGEY
2026.10.20.
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Great service for anyone starting a company in Estonia remotely! All substance requirements are explained super clearly, saved me so much headaches with tax stuff. Docs were prepared really fast and support is 10/10. Thanks a lot for professionalism!

Owner's reply
Thank you for your review! Glad we could help make your business setup smooth and headache-free. Success with your project!
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MUSTAFA KABASAKAL  profile picture
MUSTAFA KABASAKAL
2026.10.12.
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I am leaving 3 stars purely because of a delay in processing official mail. I received a system alert that a letter from the tax office arrived at the Tallinn office on Tuesday, October 6, but the PDF scan was only emailed to me on Thursday afternoon, October 8. For official state notifications, two days to process a short document creates unnecessary anxiety. That said, everything else works seamlessly: the address registration was smooth, support is always polite, and the platform itself is very convenient. Once they speed up their physical mail scanning, this will easily be a 5-star service for any business.

Owner's reply
Thank you for the honest review! We appreciate your compliments on our support and platform. You’re absolutely right about the mail delay — we’ve addressed this with our Tallinn team to speed up document scanning for time-sensitive mail. We won't let you down next time! 🤓
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SAMER AHMED  profile picture
SAMER AHMED
2026.08.19.
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Awsome team! As an e-resident, working with them has been a real pleasure. Mail is forwarded super quickly, and they explained all tax & reporting details clear. No hiden fees, completely honest and transparent.
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JURE  profile picture
JURE
2026.02.27.
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Great service!
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JANA D  profile picture
JANA D
2025.04.28.
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Отличный сервис
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VIKTORIA BON  profile picture
VIKTORIA BON
2024.04.24.
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Thank you! It was a pleasure to work with this professional team. They very quickly helped me register a company and provided me with a legal address and contact person at a reasonable price.

Owner's reply
Thank you Viktoria!
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ALEXEI KATSMAN  profile picture
ALEXEI KATSMAN
2024.02.09.
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Профессионалы своего дела!

Owner's reply
Thank you!