EMI licence and payment institution licence in Estonia

EMI licence and payment institution licence in Estonia
October 4, 2026
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An electronic money institution (EMI) or payment institution licence grants access to the payment market across the entire European Union under a single authorisation. You issue electronic money, open e-wallets for customers, process payments and operate in all EEA countries without needing separate licences in each one. In return, you are subject to a regime of financial supervision: paid-up capital, segregation of client funds, suitability assessments for senior management, risk management and ongoing reporting to the Financial Supervisory Authority.

We start with two questions that define the entire project. What licence do you need — a full-fledged EMI requiring €350,000 in capital, or a payment institution, where the requirements start at a significantly lower level, whilst for some business models a narrow licence for payment initiation or access to account information is sufficient? And will the model stand up to scrutiny? Submitting an application in which the segregation of client funds has not been properly addressed and a partner bank has not been identified means wasting half a year.

If the answers are positive, we manage the entire project: the legal entity structure, capital, policies, preparing senior management for the assessment, submitting applications to the regulator via the portal, and correspondence until a decision is reached.

Key facts

TopicPractical guidance
RegulatorFinantsinspektsioon (Financial Supervision Authority)
Legal frameworkThe Law on Payment Institutions and Electronic Money Institutions (MERAS), PSD2, EMD2
EMI capital€350,000
Capital of the payment institution€125,000 for a full range of payment services
Narrow licences€50,000 for payment initiation; €20,000 for account information services
Submission of applicationsFrom 18 March 2026 — only via the Financial Inspectorate’s application portal
Decision timeframeWithin 3 months of receipt of all necessary documents and no later than 6 months from the date of application
Actual processing time4–6 months if the application is well prepared; longer if preparation is required
AuthorisationRight to work in all EEA countries under a notification procedure
Segregation of client fundsMandatory: segregation into separate accounts, or insurance or a guarantee
ValidityThe licence is indefinite but subject to ongoing supervision
Crypto and paymentsFor some business models, both a CASP authorisation under MiCA and a payment licence may be required

How to launch a licensing project: 4 steps

1
Submit an application and describe the model: who pays whom, where the customers’ money ends up in the scheme, who holds the funds, whether any e-money is issued, and where the users are located.
2
Obtain advice on the scope and strategy: which licence applies, what capital is required, whether there is a simpler route, and what budget and timeline are realistic.
3
Agree on the cost estimate and work plan, setting out the allocation of responsibilities for each stage.
4
We prepare the application dossier and manage the project until a decision is reached by the regulator: structure, capital, policies, executive training, submission and correspondence.
How to launch a licensing project: 4 steps

If you have any questions, our managers are always on hand and ready to help! If you’re not sure whether your model requires a licence at all, simply describe your cash flow, and we’ll provide a preliminary assessment free of charge.

The provider of this service is eBusiness Solutions OÜ

An official and licensed partner providing corporate services in Estonia, and a member of the e-Residency marketplace.

Partner service
Partner service
Partner service
Partner service
Partner service

Service packages

‘Model Audit and Strategy’ Package
  • Legal classification of the scheme: do you fall within the scope of payment services regulation, and exactly which services do you provide?
  • Determining the type of licence and the applicable capital requirements
  • Exploring alternatives: operating through a licensed partner as an agent or distributor, a limited licence instead of a full one, exemptions for limited networks
  • Assessment of the client funds segregation model and the feasibility of finding a partner bank
  • Written report, roadmap and 12-month project budget
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The ‘Turnkey Licence’ package — the main one
  • Everything included in the ‘Model Audit and Strategy’ package
  • Registration or restructuring of a legal entity in accordance with legal requirements
  • Support with the contribution and confirmation of paid-up capital
  • Establishing a local presence: assistance with finding an office and sourcing and appointing a director in Estonia
  • Policy and procedures package: risk management, internal control, AML/CFT and sanctions screening, segregation of client funds, business continuity, outsourcing, complaints handling, ICT risks and cyber resilience in accordance with DORA requirements. We can help you develop these.
  • Business plan with a financial model, forecasts and stress tests – we’ll advise you on the best way to prepare it and check it for accuracy
  • Description of the funds flow chart and segregation model
  • Preparation of directors and qualified shareholders for the suitability assessment, including interviews
  • Submission of applications to the Financial Inspectorate via the portal and handling correspondence until a decision is reached
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‘Post-Licence Compliance’ Package
  • Regular reporting to the regulator and liaison with the supervisory authority
  • Monitoring capital adequacy and compliance with prudential requirements
  • Updating policies in line with regulatory changes and EBA guidance
  • Notifications regarding passporting when entering new EEA markets
  • Support for changes: new services, changes to the board and shareholders, agency network
  • Accounting for the licensed company and preparation for the audit
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What licence is required: an EMI licence, a payment institution licence, or none at all?

What licence is required: an EMI licence, a payment institution licence, or none at all?

The difference between the two models runs into hundreds of thousands of euros, and is determined not by the product’s name, but by what happens to customers’ money.

Electronic Money Institution (EMI). Required if you issue e-money: the customer deposits funds and receives an electronic balance in return, which is stored and can be spent or refunded. E-wallets, prepaid cards, in-app balances. Capital requirement: €350,000. An EMI is also authorised to provide payment services.

Payment Institution (PI). Required if you process payments but do not issue electronic money: transfers, acquiring, execution of payment orders, money transfers. Capital required for the full range of services: €125,000.

Narrow licences. For initiating payments: €50,000, with a requirement for professional indemnity insurance; for account information services — €20,000 or insurance. Many fintech products, which founders habitually refer to as ‘we need an EMI’, actually fall within these categories.

When no licence is required at all. If you do not handle clients’ money: pure software, an interface built on top of a licensed provider, operating as an agent or distributor for a licensed institution, separate restricted networks and a limited range of products. This needs to be checked before, rather than after, the budget has been approved.

Key insight: a project isn’t won on the basis of the proposal alone, but on two factors outside it

Key insight: a project isn’t won on the basis of the proposal alone, but on two factors outside it

Formally, you are putting together a set of documents. In reality, success depends on two things that are not included in the list of requirements.

Firstly, a partner bank to segregate client funds. The law requires client funds to be kept separate from the business’s own funds: either held in separate accounts at a credit institution or covered by insurance or a bank guarantee. In practice, this means you need a bank willing to open a segregated account for a licensed payment service provider — and finding one is harder than drafting policies. The regulator, for its part, wants to see a realistic segregation model, not just a statement of intent. You need to start negotiations with banks whilst preparing your application, not after the licence has been granted.

Secondly, there is the matter of senior management undergoing suitability assessments. The regulator assesses the competence, reputation and experience of each senior manager and qualified shareholder, conducts interviews and does not grant authorisation until the assessment is complete. A team cobbled together at the last minute from people with no relevant experience in payments and compliance is the most common reason for project delays.

Hence the rule of thumb: first the bank and the people, then the paperwork. Projects that proceed in the reverse order are usually what create the gap between the ‘three months required by law’ and the ‘one year in practice’.

Time limits: what the law says and what actually happens

Time limits: what the law says and what actually happens

The Act sets out a clear framework: a decision to grant or refuse a licence must be taken within three months of receiving all the necessary documents and information, but no later than six months from the date the application was submitted. We would like to highlight a recent change: from 18 March 2026, applications for licences for payment institutions and electronic money institutions must be submitted exclusively via the Financial Inspectorate’s application portal.

Why does the actual processing time take 4–6 months or longer?

  • The three-month period begins once a complete set of documents has been submitted. Whilst the regulator is requesting additional documents and clarifications, the external six-month limit applies, rather than the three-month limit. An incomplete submission does not speed up the process but postpones the starting point;
  • Interviews with senior management are scheduled according to the regulator’s timetable, not yours;
  • External processes do not take place on your premises. A bank account for capital and the segregation of funds, an auditor, ICT infrastructure compliant with DORA, and the recruitment of key personnel — these are the factors that typically determine the critical path;
  • Preparing the application dossier before submission takes from a few weeks to several months, depending on the readiness of the business model.

Realistic planning: from project launch to a fully operational, licensed company takes around a year, of which the review process accounts for less than half.

What other services do we offer?

What other services do we offer?

  • Company registration in Estonia — a legal entity in accordance with the law
  • Registered office in Estonia and contact person service
  • Substance requirements
  • CASP authorisation under MiCA
  • Accountancy services and annual accounts
  • Tax consultancy
  • Legal services: corporate documents and contracts

A licence is the top layer of an operating company. If the corporate framework has been put together carelessly – with vague descriptions of activities, a lack of accounting records, or a random address – this will come to light during the dossier assessment stage and cause months of delay.

How to obtain an EMI or payment institution licence in Estonia

Contents of the application dossier

SectionWhat is included
CorporateArticles of Association and amendments thereto, ownership structure, information on beneficial owners, organisational chart
FinancialConfirmation of paid-up capital, calculation of own funds, business plan with a model and stress tests
ManagementInformation on board members and key personnel, suitability questionnaires, allocation of responsibilities
OperationalDescription of payment services and cash flow diagrams, model for the segregation of client funds, outsourcing, agency network
ComplianceAML/CFT, sanctions screening, transaction monitoring, internal controls, audit
TechnologyICT risks and cyber resilience in accordance with DORA, testing, incident management, business continuity plan
Client-relatedClient agreements, disclosure of information, fees, complaints handling procedures

Segregation of client funds

This is at the heart of payment regulation and the regulator’s primary focus. Client funds do not belong to the institution and must not be commingled with its own: they are either held in segregated accounts at a credit institution or covered by insurance or a guarantee. In practice, it is not only the policies that are scrutinised, but also the operational procedures: how funds are identified, how daily reconciliation is carried out, what happens in the event of the institution’s insolvency, and who has access to the segregated accounts.

Registration in the EEA

A separate licence is not required in each country. The institution notifies its home regulator of its intention to provide services in other EEA countries — either directly or through agents or a branch — the regulator then forwards the information to the host authorities, after which the institution may operate in those markets. The procedure is a notification-based one, but it is substantive: the range of services must correspond to the licence issued, whilst client documentation and marketing must comply with the rules of the host countries.

Estonia or another jurisdiction

The licence is valid throughout the EEA, so the country of application determines not the market, but the cost and speed of entry. Lithuania has historically attracted payment projects due to the volume of licences issued and the speed of the process, but at the same time has tightened its supervision. Estonia is a regulator with experience in supervising banks and investment firms, applying the same standard to the payments sector: this is a plus for reputation but a minus for speed. It is worth comparing regulators in terms of their practical experience and workload, the language of communication, requirements for local staff, the availability of partner banks, and the cost of maintaining the organisational structure. We carry out such a comparison during the model audit stage.

Overlap with crypto-assets

If the model involves both payments and crypto-assets — for example, a wallet with conversion functionality or settlements in tokens pegged to a currency — a situation requiring dual authorisation may arise: both CASP authorisation under MiCA and a payment licence. The boundaries between these regimes were clarified by European authorities in 2026, but were not fully delineated. This is a case where auditing the model before the project begins saves not months, but years.

Once the licence has been granted

Authorisation marks the start of a supervisory relationship: regular reporting, external audits, compliance with requirements regarding own funds and segregation, updating of policies, notifications of material changes, and supervisory inspections. Non-compliance leads to corrective orders, fines, restrictions on operations and licence revocation. For the payments industry, losing a licence means not a pause but a complete halt – which is why compliance is embedded in the operational model rather than imposed from above.

Frequently Asked Questions

EMI issues electronic money: a customer deposits funds and receives an electronic balance, which they hold and spend. A payment institution processes payments but does not issue e-money. Hence the difference in capital requirements: €350,000 compared with €125,000 for a full range of payment services.
€350,000 for an EMI; €125,000 for a full-service payment institution; €50,000 for a payment initiation service; €20,000 or insurance cover for an account information service. The capital must be paid up and certified.
A decision is made within three months of receiving all the necessary documents and no later than six months from the date of submission. In practice, it takes 4–6 months from submission to a decision, whilst the entire project, including preparation, takes around a year.
From 18 March 2026, applications for licences to operate as a payment institution or an electronic money institution must be submitted exclusively via the Financial Inspectorate’s application portal.
Yes. The licence is valid throughout the entire EEA via a notification procedure — no separate authorisation is required in each country.
Sometimes, yes: either as an agent or distributor of a licensed institution, or via a BaaS provider. This is quicker and cheaper, and is suitable for testing the model, but it restricts you in terms of the product and the business model. We compare both approaches during the audit phase.
Yes. The regulator assesses the effectiveness of governance and the ability of key individuals to perform their duties. A formal address is not enough: there must be governance, a compliance function and internal controls that are operational on the ground.
It is not the documents, but two factors outside the application file: a bank willing to open an account to segregate client funds, and a management team undergoing a suitability assessment. It is these factors that most often determine the actual timeframe.
It is possible to acquire a licensed entity, but this is not simply a matter of purchasing a document: any change in qualifying holdings or the composition of the board of directors must be approved by the regulator, and the verification process is carried out in accordance with the same standards.
If the model involves crypto-assets, dual authorisation may be required: CASP authorisation under MiCA plus a payment licence. The boundaries between the different regimes have been clarified at European level, but have not been fully defined — this is verified during the model audit stage.
Verified by an expert
Jana Kamoza
  • Jana Kamoza
  • CEO & Legal Advisor at eBusiness Solutions OÜ
  • 6+ years of experience in corporate services, compliance and international business
  • Linkedin

Start by asking ‘what sort of licence?’, rather than ‘how much does it cost?’

Please describe the flow of funds: who pays whom, where clients’ money ends up, whether you issue e-money, and where your users are located. Within one working day, we’ll provide a preliminary assessment of the scope, set out a realistic budget and timeline, and let you know if there’s a quicker route for your model.

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Start by asking ‘what sort of licence?’, rather than ‘how much does it cost?’